PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G35430.1 | ||||||||
Common Name | T32F12.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 252aa MW: 27735.7 Da PI: 8.5766 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 43.1 | 6.7e-14 | 144 | 170 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ ++ tG+C++G+ C+FaHgp AT2G35430.1 144 WKTRICNKWQTTGYCPFGSHCHFAHGP 170 8************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-14 | 68 | 104 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 70 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-5 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 138 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-10 | 141 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.117 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-8 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-11 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSHRRDYGSD AVHVRITHDP PPENCFPNSG DSSVWATEDD YSRVWAINSD GAESPSKKTR 60 SSSSSEIGKS FFKTKLCFKF RAGTCPYSAS SCHFAHSAEE LRLPPPPPPN WQETVTEASR 120 NRESFAVSLG PRGNVAQTLK SPNWKTRICN KWQTTGYCPF GSHCHFAHGP SELHTFGGGL 180 VEGECKIGTS ATLDTKQRGQ VDTVTSLVSP GVSSQRTSSA VTQKPNGVRT QRKWKGPDKI 240 SRVYGDWIDD IE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49567 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 266622_at | 0.0 | ||||
Expression Atlas | AT2G35430 | - | ||||
AtGenExpress | AT2G35430 | - | ||||
ATTED-II | AT2G35430 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G35430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G35430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020232 | 0.0 | BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds. | |||
GenBank | BT020553 | 0.0 | BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181086.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q5PP65 | 0.0 | C3H28_ARATH; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | A0A178VV91 | 1e-179 | A0A178VV91_ARATH; Uncharacterized protein | ||||
STRING | AT2G35430.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 | Representative plant | OGRP2045 | 17 | 37 |
Link Out ? help Back to Top | |
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Phytozome | AT2G35430.1 |
Entrez Gene | 818109 |
iHOP | AT2G35430 |
wikigenes | AT2G35430 |
Publications ? help Back to Top | |||
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