PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g06720.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 641aa    MW: 72330.8 Da    PI: 6.4525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g06720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.3e-15442488455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  Vang10g06720.1 442 NHVMSERRRRAKLNERFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 488
                     799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5321203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18440505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-14441492No hitNo description
Gene3DG3DSA:4.10.280.109.4E-18442497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-15444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
LYETSCVYSA KPENMVPENM KKQLALSVRS IQWSYAILWT DSTTQPGVLR WGEGYYNGDI  60
KTRKTSQGVE LNSDQIGLQR SEQLRELFKS LKTTEITPQS KRPSAALSPE DLTDAEWYYL  120
VCMSFVFNIG QGLPGRVLAK GQSIWLNNAH SADCKVFSRS LLAKSASIET VLCFPVMEGV  180
IELGTTEHVS EDFSLIERIK TSFLNNFHVN DPIKSGTALK SRNQEDLAYV AFDNNVESIP  240
EIGYEIASKT SPDGSSNAFQ AYQPLDETFM VERITSGTSQ VQSWQVMDDE ISNCVHNSMN  300
SSDCISQTFA SPENIPSSPK CNNPSDPFAR DIQKCNNPKM TLVDPRGDDW HYQRVLSDLL  360
KTSDQLLMKM HSQKFHQESS FVCWRPERAT DCQWPRSGTS QKLLKKVLFE VPQMHMDGLH  420
ESQEENDYKE GMRLETDEIG MNHVMSERRR RAKLNERFLT LRSMVPSISK DDKVSILDDA  480
IEYLKKLERR IKELEVQRGI ANMEPGTRRS PQDMVERTSD HYFSKNNNGK KSVVKKRKVC  540
GVDETGKEIN SDALKGSYAN DITVRTSDNE IVIEMKCPAR AGRLLEIMEA VNSLSIDFNS  600
VQSTEADGNL YLTIKSVLTG ATIATTKRIK QALQKVASKF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-143320824195Transcription factor MYC3
4rqw_B1e-143320824195Transcription factor MYC3
4rs9_A1e-143320824195Transcription factor MYC3
4yz6_A1e-143320824195Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g06720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440735.10.0PREDICTED: transcription factor EGL1-like
TrEMBLA0A0S3QXK10.0A0A0S3QXK1_PHAAN; Uncharacterized protein
STRINGXP_007160070.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-173bHLH family protein