PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g04870.1 | ||||||||
Common Name | LR48_Vigan01g002100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26466.8 Da PI: 8.5446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.3 | 2.3e-47 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp ++ + +e yfFs+++ ky++g+r nr+tk gyWkatg+dk++ s+ Vang10g04870.1 14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKHDPWDLPGNC--DPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSS 105 79****************************.89***************544..67899***********************************98 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg++ktL+fy+g++pkg++tdWv+heyrl Vang10g04870.1 106 snaCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRL 141 5555556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-55 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.085 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKHDPWDLP 60 GNCDPQERYF FSPKEAKYRN GNRMNRTTKC GYWKATGSDK RISSSSNACN GIVGIRKTLI 120 FYEGKSPKGS RTDWVLHEYR LANAETAACN SSHNYVNEIG DWVLCRLSMK KRSIESGVDE 180 KQRVHGGPRL MFDFMMLGKT DSSTSSSCSS SNNIMEVSSN VSDHEETSGG YTYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 14 | 175 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 14 | 175 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 14 | 175 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g04870.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-154 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432261.1 | 1e-177 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 2e-70 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0L9TJ77 | 1e-176 | A0A0L9TJ77_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QXU6 | 1e-176 | A0A0S3QXU6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159989.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-72 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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