PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g03510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 371aa    MW: 41210.9 Da    PI: 8.3935
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g03510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18299332134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Vang10g03510.1 299 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 332
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-16293343IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.411297329IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14297355No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14297330IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-15298345No hitNo description
PfamPF003201.6E-16299332IPR000679Zinc finger, GATA-type
PROSITE patternPS003440299324IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDGLFSNVCF GGLASMKDWL FFDKNFNGLS DNLLDDVMDI EFFDFPFEDV ETDDGAEQDW  60
NAQFKFLEEP SLGIFPGQSS QLCAHTQNEN VKVETSFYAS VFGFACLFVL LVLAFTKSLL  120
GLTSVFSSDA HNLKQTSPST PASIPLHFCS LEESSSPPIF STIVATAKTA GPKYSKNVPI  180
QKVSFTAKDL HQFQTNSPVS VFENSSSSSS VENSNLELPA IPTKRPRSKR RPLSNITLLY  240
SIPFIFTSPV FQKSEFEAQP FGKFSSVIKK QRKKNIPMVG NKIEMKKSSS EESVGIRKCM  300
HCEVTKTPQW REGPMGPKTL CNACGVRYRS GRLFAEYRPA ASPTFVASLH SNSHKKVLEI  360
RNRDTHVTVK *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g03510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433895.11e-132PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0L9V6I01e-146A0A0L9V6I0_PHAAN; Uncharacterized protein
STRINGGLYMA12G08131.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11