PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g02540.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 560aa    MW: 62252.5 Da    PI: 5.7011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g02540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07123144426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck Gd C +aHg
  Vang10g02540.1 123 SACPDFRK-GSCKKGDACEYAHG 144
                     67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0871108IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5123146IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5123144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643154178IPR000571Zinc finger, CCCH-type
SMARTSM0035614154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MLGETNRANP TVHVPPWPLI HESSPEIFSP YTANADYSPY SLQEALSALQ HYDSTDAESD  60
SDVPSLESDV PVDAYSCDHF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGSACPDFRK GSCKKGDACE YAHGVFECWL HPARYRTQPC KDGTSCRRRV CFFAHTPEQL  180
RVLPQQSPRS ADSYDGSPLR HAIESSKTAA PFVSSPGSLS PPVESPPMSP MTRSGSLSVN  240
EMVASLRNLQ LGKIKSLPSS WNVIGSPGFG SPRGPVIRPG FFSLPSTPTQ APVRGGVNYF  300
DLWEQSCEEE PVMERVESGR NIRARMFEKL SKENVLDGPG SGEPVVPDVG WVSELVIFKD  360
EHPKHLYSKL EMMQEGVENG WMVCEIRQSG YIENSDLEFV LMAGFACQGW QTRKGKAANY  420
HSCWIGIDAN VFPHHLFQRT WSPILSRAED RVFDHENSAE SRVLGLERTH IPVPSPLPLG  480
SNVSGLGSSC SVPLSNEVSV VSNSTSFAKQ ENQTQWFGYD DDIEGQNEAL LLDFVYEDLL  540
LSNGFVSQEK SSEIAPSFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g02540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441381.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-131C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0L9VS030.0A0A0L9VS03_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QXA40.0A0A0S3QXA4_PHAAN; Uncharacterized protein
STRINGXP_007160259.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-131C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]