PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1023s00020.1
Common NameLR48_Vigan10g142600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 212aa    MW: 23940.3 Da    PI: 9.0308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1023s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.33.7e-121511751135
              GATA  11 lWRrgpdgnktLCnaCGlyyrkkgl 35 
                        WR gp g+ktLCnaCG++y++ +l
  Vang1023s00020.1 151 EWRAGPLGPKTLCNACGVRYKSGRL 175
                       6********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-4145189IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-7151173IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.09E-8151199No hitNo description
PfamPF003206.8E-10151175IPR000679Zinc finger, GATA-type
CDDcd002022.12E-7152187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
LLMDMDVCRN VSVSSECQQE LPTLDDLFSH QNMEEDFGME WLSVFVEDCF SSKQSFLLAP  60
PGVETTSPST KPSSTMQRPQ QSYCPLQNFS VPGKARSKRK RLSAPRTKHT LSTWSNNFST  120
QVLSSDPPLL KQAYWLADSE LIVPKKKDEQ EWRAGPLGPK TLCNACGVRY KSGRLLPEYR  180
PAKSPTFVSY LHSNSHKRVM EMRMSVLSTQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1023s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439010.11e-145PREDICTED: GATA transcription factor 9-like
TrEMBLA0A0L9VLD51e-144A0A0L9VLD5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9T71e-144A0A0S3T9T7_PHAAN; Uncharacterized protein
STRINGXP_007151835.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-33GATA transcription factor 9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]