PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g06920.1 | ||||||||
Common Name | LR48_Vigan04g008500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 124aa MW: 14039.3 Da PI: 10.3136 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.2 | 1.2e-12 | 3 | 31 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 ++++ LA++l+L+ rqV vWFqNrRa+ k Vang09g06920.1 3 AQKQALADQLNLKHRQVEVWFQNRRARTK 31 689************************98 PP | |||||||
2 | HD-ZIP_I/II | 84.6 | 1.3e-27 | 3 | 66 | 27 | 90 |
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +K++la +L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr++ Vang09g06920.1 3 AQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQ 66 69***********************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.762 | 1 | 33 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.57E-7 | 2 | 34 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-11 | 3 | 31 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.1E-10 | 3 | 31 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-10 | 3 | 42 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 8 | 31 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.1E-21 | 33 | 76 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.0E-9 | 33 | 67 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MQAQKQALAD QLNLKHRQVE VWFQNRRART KLKQTEVDCE FLKKCCEKLT DENLRLKKEL 60 QELRAQKIGP KPLYIQLSKA TTLSICSSCE KELKPNEGKK GGISDVVRNS SQKLQNSVGV 120 KGI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 33 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g06920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-160 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421312.1 | 6e-82 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46602 | 5e-38 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0L9UBF3 | 1e-80 | A0A0L9UBF3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RHK0 | 1e-80 | A0A0S3RHK0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138743.1 | 2e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 2e-40 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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