PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g06640.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ARF

Protein Properties

Length: 1025aa MW: 114153 Da PI: 6.569

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g06640.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.8e-22	174	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ Vang09g06640.1 174 FCKTLTASDTSTHGGFSVPRRAAEKIfplldfsM-QPPA-QEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 264 99***************************954.5444.48**********************************************..557 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++++ r+ Vang09g06640.1 265 KQQLLLGIKRA 275 88889988775 PP
2	Auxin_resp	118.1	7.1e-39	300	382	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s+F+++YnPras+seFv++++k++kal ++ s+GmRf+m+fete+s rr +Gt++g+sdldpvrW++S+Wr+L+ Vang09g06640.1 300 AAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQASLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKHSQWRNLQ 382 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.57E-43	164	303	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.9E-41	166	289	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.88E-19	173	265	No hit	No description
Pfam	PF02362	8.8E-21	174	275	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	174	276	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-22	174	276	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.9E-34	300	382	IPR010525	Auxin response factor
Pfam	PF02309	4.4E-9	895	983	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	24.655	897	990	IPR000270	PB1 domain
SuperFamily	SSF54277	9.81E-9	911	975	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
LVHSLGLLML LISLVPRRFW LLGHPQLHLV SAARFLFLGF EVLVLAVLMK APPNGYLPNS 60 SEGERKTINS ELWHACAGPL VSLPPVGSLV VYFPQGHSEQ VAASMQKEAD FVPSYPNLPS 120 KLICMLHNVA LHADPETDEV YAQMTLQPVT KYDKEAILAS DMGLKQNQQP TEFFCKTLTA 180 SDTSTHGGFS VPRRAAEKIF PLLDFSMQPP AQEIVAKDLH DSTWTFRHIY RGQPKRHLLT 240 TGWSVFVSTK RLFAGDSVLF IRDEKQQLLL GIKRANRQQP ALSSSVISSD SMHIGILAAA 300 AHAASNNSPF TIFYNPRASP SEFVIPLAKY NKALFNQASL GMRFRMMFET EESGVRRHMG 360 TITGISDLDP VRWKHSQWRN LQVGWDESTA GERPSRVSLW DIEPVVTPFY ICPPPFFRPK 420 FPKQPGMPDD DSDIENAFKR AMPWLGDDLG MKDASSSIFP GLSLVQWMSM QQNNQFSAAQ 480 SGFMPPSMLS SNTLHGNLPT DDPSKLLNFQ APVLSAPNLQ FNKPNLPNQV NQLQQPQTSW 540 PPQHQQQQKV QSLMPTTLNP LQQQQQRQQQ LPVLQNLSQP QQQQPQMPQQ RPQQPQQQQS 600 CQQTIMNNEA VSSNQIQNQC VQQPQLPQLP LSQCHQPQQL GNNAFSMEKL FNGNNYSSSA 660 LMQTQQFPMN QSQNTQKSLT NTRAPSTLTD GDAPSCSTSP STNNCQISPS NLIKRNQQLP 720 TTLGGPSVVE PTNHLIQELH RKSEMQIKHE LPCVRGPDQL KCKGTIADQM EASSGTSYSI 780 DPNNIHQNFP LPSFCMDGDV QSHPRNNLPF TSNLDGLTPD TLLSRGYDSQ KDLQNLLSNY 840 GGAPRDIETE LSTAAISSQP FGVPDMPFKP GCSSDIAIND PGVLNDGLWA SQTQRMRTYT 900 KVQKCGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTEWKLVYV DHENDILLVG 960 DDPWEEFVSC VQSIKILSSA EVQQMSLDGD LGHVPVPNQA CSGTDNGNAW RGQYDDNSAA 1020 SFNR*

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

LVHSLGLLML LISLVPRRFW LLGHPQLHLV SAARFLFLGF EVLVLAVLMK APPNGYLPNS  60
SEGERKTINS ELWHACAGPL VSLPPVGSLV VYFPQGHSEQ VAASMQKEAD FVPSYPNLPS  120
KLICMLHNVA LHADPETDEV YAQMTLQPVT KYDKEAILAS DMGLKQNQQP TEFFCKTLTA  180
SDTSTHGGFS VPRRAAEKIF PLLDFSMQPP AQEIVAKDLH DSTWTFRHIY RGQPKRHLLT  240
TGWSVFVSTK RLFAGDSVLF IRDEKQQLLL GIKRANRQQP ALSSSVISSD SMHIGILAAA  300
AHAASNNSPF TIFYNPRASP SEFVIPLAKY NKALFNQASL GMRFRMMFET EESGVRRHMG  360
TITGISDLDP VRWKHSQWRN LQVGWDESTA GERPSRVSLW DIEPVVTPFY ICPPPFFRPK  420
FPKQPGMPDD DSDIENAFKR AMPWLGDDLG MKDASSSIFP GLSLVQWMSM QQNNQFSAAQ  480
SGFMPPSMLS SNTLHGNLPT DDPSKLLNFQ APVLSAPNLQ FNKPNLPNQV NQLQQPQTSW  540
PPQHQQQQKV QSLMPTTLNP LQQQQQRQQQ LPVLQNLSQP QQQQPQMPQQ RPQQPQQQQS  600
CQQTIMNNEA VSSNQIQNQC VQQPQLPQLP LSQCHQPQQL GNNAFSMEKL FNGNNYSSSA  660
LMQTQQFPMN QSQNTQKSLT NTRAPSTLTD GDAPSCSTSP STNNCQISPS NLIKRNQQLP  720
TTLGGPSVVE PTNHLIQELH RKSEMQIKHE LPCVRGPDQL KCKGTIADQM EASSGTSYSI  780
DPNNIHQNFP LPSFCMDGDV QSHPRNNLPF TSNLDGLTPD TLLSRGYDSQ KDLQNLLSNY  840
GGAPRDIETE LSTAAISSQP FGVPDMPFKP GCSSDIAIND PGVLNDGLWA SQTQRMRTYT  900
KVQKCGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTEWKLVYV DHENDILLVG  960
DDPWEEFVSC VQSIKILSSA EVQQMSLDGD LGHVPVPNQA CSGTDNGNAW RGQYDDNSAA  1020
SFNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-167	63	403	45	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16461383, ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g06640.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and ethylene. {ECO:0000269\|PubMed:16461383}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022842521.1	0.0	auxin response factor 19-like
Swissprot	Q8RYC8	0.0	ARFS_ARATH; Auxin response factor 19
TrEMBL	A0A4P1QXW8	0.0	A0A4P1QXW8_LUPAN; Uncharacterized protein
STRING	GLYMA09G08350.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4918	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Perilli S, et al. RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling. Plant Cell, 2013. 25(11): p. 4469-78 [PMID:24285791] Sun Y, et al. Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas. Sci Rep, 2017. 7: p. 40844 [PMID:28102350] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Olmo R, et al. Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program? Front Plant Sci, 2017. 8: p. 875 [PMID:28603536] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana. Plant Sci., 2017. 264: p. 168-178 [PMID:28969797] Nakamura M, et al. Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells. Plant Physiol., 2018. 176(1): p. 378-391 [PMID:29084900] Hong L, et al. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J., 2018. 93(2): p. 246-258 [PMID:29155478] Lee K,Park OS,Seo PJ Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Sci Signal, 2018. [PMID:29184030] Kimura T, et al. Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 823-835 [PMID:29401292] Schoenaers S, et al. The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth. Curr. Biol., 2018. 28(5): p. 722-732.e6 [PMID:29478854] Huang KL, et al. The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots. Plant Physiol., 2018. 178(1): p. 413-427 [PMID:30026290]