PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g02970.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 258aa    MW: 29629.2 Da    PI: 10.9982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g02970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.5e-071281681055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+++ ++   L++l+P++     kK++  + Le+A +Y++ Lq
  Vang09g02970.1 128 RQRRQKLSEKTRCLQKLMPWD-----KKMDQGTLLEEAYKYVRFLQ 168
                     9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.966118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-10124177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-4124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-4126170No hitNo description
Gene3DG3DSA:4.10.280.104.7E-9127175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAASSRRFCG AKVWRSSCEM RKKRRDSERL ASLVWGSLQS LLSLNPSLFA DGFPTLASLT  60
DDPTLIPQTA EPPKILVPKT EPSQPFKFFP QYHPTPFLRL PQLRSPEQPQ PKRQRLESPV  120
IPQSNLARQR RQKLSEKTRC LQKLMPWDKK MDQGTLLEEA YKYVRFLQAQ FRVLQSMPSH  180
SSSSSPSFRQ NSAVFVDLEK LNRSQLLQVL VNSPVAQTML YSQGFCVFSL EQLSLLRKLS  240
DRRHHHHNHV SSKSIFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g02970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500688.11e-142transcription factor bHLH117
RefseqXP_027929974.11e-143transcription factor bHLH117
TrEMBLA0A0L9UMQ81e-157A0A0L9UMQ8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SH921e-157A0A0S3SH92_PHAAN; Uncharacterized protein
STRINGXP_007149941.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.14e-22bHLH family protein