PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang09g02510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 238aa MW: 27702.2 Da PI: 7.9773 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.4 | 9.4e-26 | 156 | 204 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi +AAkeL+v+lT LK++CR++GI+RWPhRk+ sl Vang09g02510.1 156 ILSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSL 204 57899*****************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 140 | 226 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-21 | 157 | 204 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MENQQLTFWN SNYQIDENSF APTCQFSYDY FRKSYHVSIF NFCRGNASDG FHWPYEFPLQ 60 DSYFDVVPFM KCYYPHDILY ETLPLEPTPL SFQGFAGADY DFSDVKNVLS AWNEVDVSDH 120 KPAFSSSNDG GSVNETMEEV KGKQHREERI SSSARILSRK TVSQYFYMPI SQAAKELNVG 180 LTHLKKRCRE LGIQRWPHRK LMSLQTLIKN MQIWNLKIKQ EGLDKLVSRL TTRRGNS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang09g02510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495091.1 | 1e-133 | protein RKD1 | ||||
Swissprot | Q9CA66 | 8e-27 | RKD2_ARATH; Protein RKD2 | ||||
TrEMBL | A0A1S3TMU6 | 1e-132 | A0A1S3TMU6_VIGRR; protein RKD1 | ||||
STRING | GLYMA06G20881.1 | 4e-95 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-29 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|