PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00980.1
Common NameLR48_Vigan04g046200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28992.7 Da    PI: 4.3631
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-192073356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k+++++ +q++ Le+ F +++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Vang09g00980.1 20 KKRRLSVDQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 73
                    566899***********************************************9 PP
2HD-ZIP_I/II129.51.3e-4119111193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ + L +e+++L++e+++
  Vang09g00980.1  19 EKKRRLSVDQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAEVAK 111
                     69**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-191277IPR009057Homeodomain-like
PROSITE profilePS5007117.4431575IPR001356Homeobox domain
SMARTSM003891.2E-191879IPR001356Homeobox domain
PfamPF000469.6E-172073IPR001356Homeobox domain
CDDcd000865.24E-182076No hitNo description
Gene3DG3DSA:1.10.10.604.7E-202282IPR009057Homeodomain-like
PRINTSPR000311.2E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000311.2E-55571IPR000047Helix-turn-helix motif
PfamPF021832.4E-1575116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
LPYDDNGDED TDEYFHQPEK KRRLSVDQVQ FLEKSFDEEN KLEPERKIRL AKELGLQPRQ  60
VAIWFQNRRA RWKTKQMEKD YDSLHACYND LKASYDDLLR EKDKLQAEVA KLSEKVLERE  120
KLEEGNFYRA ETKGFQEPLQ KSMIDSASEG EGSKVDISSA KSDMFDSSES PRYTDGVHST  180
LLETGDSSYV FEADQSDVSQ DEGDNPSNTL LPHYMFPKLE DVGYTDQPHN SCHFGFPEEE  240
DQAIWSWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419795.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A0L9UCK90.0A0A0L9UCK9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG260.0A0A0S3RG26_PHAAN; Uncharacterized protein
STRINGXP_007138213.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-43homeobox 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]