PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00610.1
Common NameLR48_Vigan04g058400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 190aa    MW: 21691.4 Da    PI: 10.0335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-091969654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54
                    + +Er+RR +++s  ++L +l+P++ k+p+ K  l   + L +A +YIk++
  Vang09g00610.1 19 KTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKlmLGQQDQLDLAARYIKQM 69
                    689*********************6678888867888899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.70E-51174No hitNo description
PROSITE profilePS508889.8831369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-91788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-91787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00441975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-61969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKKRLAASTI DDSTKLDRKT IERNRRIHMK SLCHQLGSLI PPNLKPPKSK LMLGQQDQLD  60
LAARYIKQMR ERIEKLKRQK EQAMLNQSSE RKMFVDTKLP IPELRDLGSG IEVMLVSGLN  120
KTFMLYEVIS VLEEEGAEVV TASFSTVGDK LFYVVHAQVK ISRVGVETTR VKDRLQEFIA  180
PLEIWPEDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421210.11e-137PREDICTED: uncharacterized protein LOC108331099
TrEMBLA0A0L9UCE91e-135A0A0L9UCE9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG411e-135A0A0S3RG41_PHAAN; Uncharacterized protein
STRINGXP_007138091.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-26bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]