PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g05160.1 | ||||||||
Common Name | LR48_Vigan11g168200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 253aa MW: 27872.9 Da PI: 8.2121 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 90 | 144 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++ keq +Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Vang08g05160.1 90 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLXPRQVEVWFQNRRARTK 144 66677889*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.4 | 1.1e-39 | 90 | 179 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl keq+ +LEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+e+n+rL+kev+eLr +l Vang08g05160.1 90 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLXPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEDNRRLQKEVQELR-AL 179 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.1E-15 | 7 | 60 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 2.61E-18 | 76 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-18 | 83 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-15 | 88 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.85E-15 | 90 | 147 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 90 | 144 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.3E-24 | 146 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.7E-12 | 146 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLLCSASHVT NRSSEPPPFF FGIDVNLPPP PSVAPCYEEN GVSSPNSAVS SISGKRSERE 60 ENERGSCSRG GSEDDDGGGC GGDADGDTSR KKLRLLKEQA LVLEETFKEH NTLNPKQKQA 120 LAKQLNLXPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCYE NLTEDNRRLQ KEVQELRALK 180 FSPQLYXHMN PPTTLTMCPS CERVAVSSAS SSSAAMPSVP PSGNHNPLGP TIRRPVPVNP 240 WAAMSIQHRP PP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | SRKKLRL |
2 | 138 | 146 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g05160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441546.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein HAT3-like | ||||
Swissprot | P46602 | 1e-91 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0L9VUN6 | 1e-177 | A0A0L9VUN6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SVD1 | 1e-177 | A0A0S3SVD1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134496.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 9e-71 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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