PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang08g05040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29722 Da PI: 10.3638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 73 | 123 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeI+dp + k+ r++lg++ t+eeA a+++a+ k++g Vang08g05040.1 73 HFRGVRRRP-WGKFAAEIWDP---KrKHGRVWLGTYETEEEAGLAYDRAAFKMRG 123 79*******.**********8...44469************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.61E-30 | 72 | 133 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-21 | 73 | 132 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.367 | 73 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-13 | 73 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-30 | 73 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-35 | 73 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-13 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-13 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MANDLSSGVQ SFELEHDPQI LVNVSDQETF YSSSYENPIA NPCHVNDATQ LFACKREAPV 60 APREEHAPPK WKHFRGVRRR PWGKFAAEIW DPKRKHGRVW LGTYETEEEA GLAYDRAAFK 120 MRGSKAKLNF PHLIGSHAPP ERVGVAGVSR KPNLPEACFP PLSAAEDGSQ PQGSKKRRNL 180 ADLLNSYISP KPNPSSIFLW ISYLRRELPP RPPSHTPISL PLGRRVNFTR FPRLLSSRHF 240 LLINDIFHAI RVQVCGTMFK LK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 70 | 136 | 2 | 68 | ATERF1 |
3gcc_A | 3e-26 | 70 | 136 | 2 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang08g05040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441337.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A0L9VU72 | 1e-134 | A0A0L9VU72_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SVQ9 | 1e-134 | A0A0S3SVQ9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134478.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-33 | ethylene-responsive element binding factor 13 |