PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g02820.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 303aa MW: 34476.1 Da PI: 4.4056 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k Vang08g02820.3 61 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 114 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 3.9e-42 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+++ Vang08g02820.3 61 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVQENDKLKAEVNS 152 9**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-19 | 52 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 58 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-17 | 59 | 117 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-20 | 63 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.4E-18 | 116 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
LFVTDVVVVV CVWWLVSGSK SMVDFENVSG GRMTDRPFFQ ALEKEENCDD DYEGCFHQPG 60 KKRRLTSEQV QFLERNFEVE NKLEPERKVQ LAKELGLQPR QVAIWFQNRR ARFKTKQLEK 120 DYGTLKASYD RLKGDYESLV QENDKLKAEV NSLESKLILR DKEKENSDDK SSPDAVNSPH 180 KEPMDLISNS TSENGTKVSL PIMVTCKQED ANSAKSDVLD SDSPHCTDGN HPSSFVEPAD 240 SSHAFEPDHS DFSQDEEDNL SESLLTLPCL PKVEEACYDD PPENPCNFGF HVEDQTFCFW 300 PY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 116 | RRARFKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g02820.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF402605 | 0.0 | AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157405.1 | 0.0 | hypothetical protein PHAVU_002G067200g | ||||
TrEMBL | A0A0L9VNR3 | 0.0 | A0A0L9VNR3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T340 | 0.0 | A0A0S3T340_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157405.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-47 | homeobox 1 |