PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g02820.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 331aa    MW: 37344.3 Da    PI: 4.5321
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g02820.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-1989142356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Vang08g02820.2  89 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 142
                     56689***********************************************98 PP
2HD-ZIP_I/II1314.7e-4289180293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+++
  Vang08g02820.2  89 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVQENDKLKAEVNS 180
                     9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-1979146IPR009057Homeodomain-like
PROSITE profilePS5007117.37884144IPR001356Homeobox domain
SMARTSM003891.5E-1786148IPR001356Homeobox domain
CDDcd000869.40E-1887145No hitNo description
PfamPF000462.5E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1991151IPR009057Homeodomain-like
PRINTSPR000315.2E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6124140IPR000047Helix-turn-helix motif
PfamPF021839.6E-18144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAGGKLHAAS TMSLLLQNER LPCSSEVLES LWAHTSNPAS FQGDLFLLNH ALSATSLPHQ  60
LLFTRIDTSL EKEENCDDDY EGCFHQPGKK RRLTSEQVQF LERNFEVENK LEPERKVQLA  120
KELGLQPRQV AIWFQNRRAR FKTKQLEKDY GTLKASYDRL KGDYESLVQE NDKLKAEVNS  180
LESKLILRDK EKENSDDKSS PDAVNSPHKE PMDLISNSTS ENGTKVSLPI MVTCKQEDAN  240
SAKSDVLDSD SPHCTDGNHP SSFVEPADSS HAFEPDHSDF SQDEEDNLSE SLLTLPCLPK  300
VEEACYDDPP ENPCNFGFHV EDQTFCFWPY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g02820.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026050.0AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157405.10.0hypothetical protein PHAVU_002G067200g
TrEMBLA0A0L9VNR30.0A0A0L9VNR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3400.0A0A0S3T340_PHAAN; Uncharacterized protein
STRINGXP_007157405.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-45homeobox 1