PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g02820.1
Common NameLR48_Vigan10g227600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34452 Da    PI: 4.4778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g02820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-1963116356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Vang08g02820.1  63 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 116
                     56689***********************************************98 PP
2HD-ZIP_I/II131.24e-4263154293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+++
  Vang08g02820.1  63 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVQENDKLKAEVNS 154
                     9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1953120IPR009057Homeodomain-like
PROSITE profilePS5007117.37858118IPR001356Homeobox domain
SMARTSM003891.5E-1760122IPR001356Homeobox domain
CDDcd000869.12E-1861119No hitNo description
PfamPF000462.2E-1663116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-2065125IPR009057Homeodomain-like
PRINTSPR000314.5E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000314.5E-698114IPR000047Helix-turn-helix motif
PfamPF021838.5E-18118159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAGGKLHAAS TMSLLLQNER LPCSSEVLES LWAHTSNPAS FQALEKEENC DDDYEGCFHQ  60
PGKKRRLTSE QVQFLERNFE VENKLEPERK VQLAKELGLQ PRQVAIWFQN RRARFKTKQL  120
EKDYGTLKAS YDRLKGDYES LVQENDKLKA EVNSLESKLI LRDKEKENSD DKSSPDAVNS  180
PHKEPMDLIS NSTSENGTKV SLPIMVTCKQ EDANSAKSDV LDSDSPHCTD GNHPSSFVEP  240
ADSSHAFEPD HSDFSQDEED NLSESLLTLP CLPKVEEACY DDPPENPCNF GFHVEDQTFC  300
FWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g02820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026050.0AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157405.10.0hypothetical protein PHAVU_002G067200g
TrEMBLA0A0L9VNR30.0A0A0L9VNR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3400.0A0A0S3T340_PHAAN; Uncharacterized protein
STRINGXP_007157405.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-45homeobox 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]