PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0844s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 549aa    MW: 60584.5 Da    PI: 6.5112
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0844s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22128229199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+ +a++          ++ +   l+++d +g  W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF   +
  Vang0844s00010.1 128 FSKILTPSDANNGGGFSVPRFCADSVfppldfrADPPVQ--LLSVTDIHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFV--K 216
                       88*****************9999999*****97556555..7************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +s+++  v+++r+
  Vang0844s00010.1 217 DSDGNVSVGIRRA 229
                       799999****997 PP
2Auxin_resp73.46.5e-25267344182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                       aa+ +s + +FevvY+Pra+ ++Fvv++e ve+a+++ ++ GmR+k+ +etedss+ ++ +Gtv++  ++d+      +Wr+L
  Vang0844s00010.1 267 AAECVSRNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWfQGTVTSAYASDN-----GPWRML 344
                       6788999*************************************************************9777.....555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-34120234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-29122235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-19127228No hitNo description
SMARTSM010191.9E-18128230IPR003340B3 DNA binding domain
PfamPF023621.3E-20128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365128230IPR003340B3 DNA binding domain
PfamPF065074.2E-21267344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MWTLVQCGRI RECSLSVREH SVHGRPVRIG RSSTEGGTTA AGEREKRGQL QYWQWQWHTP  60
SLSYSPSHVS KVKPYSDLTF SLVQFNMPLP QLLLTPLPHP FHRNNQNDDS NIQSDDEERE  120
CQNGVVSFSK ILTPSDANNG GGFSVPRFCA DSVFPPLDFR ADPPVQLLSV TDIHGVAWRF  180
RHIYRGTPRR HLFTTGWSKF VNHKKLIAGD SVVFVKDSDG NVSVGIRRAT RFVSSSSPVE  240
EEQPPAQGEG FPLYATGRVS PKAVKAAAEC VSRNAPFEVV YYPRAGFADF VVSAEVVEDA  300
MRCAWAGGMR VKIGMETEDS SRMTWFQGTV TSAYASDNGP WRMLQVNWDE PEVLQNAKRV  360
SPWQVELVSP SLALHTAFSP SKRFRADQGS GLFSDREGDP FFPMIGFPNS TMANMDKKLL  420
SYDTFPAGMQ GARHDLFSAS SFSNFLNDNS YLYMGSSSFG NNTVQSLGIV STDLNISSSQ  480
SDDTSPHSQS SLHSFDTEFT GTRHCNTKVG SGSILLFGKI IQPAESPHDA ADYIERDGSG  540
GSKEIEDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-48128366158388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0844s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430846.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU61e-121ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A0L9UY250.0A0A0L9UY25_PHAAN; Auxin response factor
TrEMBLA0A0S3RMI30.0A0A0S3RMI3_PHAAN; Auxin response factor
STRINGXP_007141116.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-112auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]