PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang07g06050.1

Common Name

LR48_Vigan03g221000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 436aa MW: 49273.8 Da PI: 8.0108

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang07g06050.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	144	174	5	35
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 k rr+++NReAAr+sR+RKka++++Le Vang07g06050.1 144 KTLRRLAQNREAARKSRLRKKAYVQQLESSR 174 7789***********************9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-8	137	186	No hit	No description
SMART	SM00338	2.7E-8	140	213	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	142	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-7	144	186	No hit	No description
Pfam	PF00170	5.6E-8	144	179	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.46E-20	144	193	No hit	No description
PROSITE pattern	PS00036	0	147	162	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-31	236	309	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MASKTTNLTT NNQLEPLPPP QYRHPHPHHY QLQQHQPQNH QVHDHQISFG MMQSSSSSSS 60 IPGNYLRGKD SGAYDLGELD QAFFLYLDGQ ADPSTVQDQR QNSSSGMRPP TLNIFPSKPM 120 HRESNRKGPT SSSEQEGPKT PDPKTLRRLA QNREAARKSR LRKKAYVQQL ESSRVRLNQL 180 EQELQRARTQ GMFLGGGSLL GGEQSLPVAM NTISSEAAMF DVEYARWVEE HHRIVCELRA 240 AVQEHLPENE LRLFVDNCLA HYDQVMNLKS LVAKTDVFHL VSGMWKTPAE RCFMWIGGFK 300 PSELIKIILS QIEPLTEQQI LGICGLQQST QEAEEALSQG LEALNQSLSD TITSDSLSYP 360 LNMANYMGQM AVAMNKLSTL EGFVRQADNL RHQTIHRLHQ LLTTRQAARC FLAIAEYFHR 420 LRALSSLWLA RPRVE*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MASKTTNLTT NNQLEPLPPP QYRHPHPHHY QLQQHQPQNH QVHDHQISFG MMQSSSSSSS  60
IPGNYLRGKD SGAYDLGELD QAFFLYLDGQ ADPSTVQDQR QNSSSGMRPP TLNIFPSKPM  120
HRESNRKGPT SSSEQEGPKT PDPKTLRRLA QNREAARKSR LRKKAYVQQL ESSRVRLNQL  180
EQELQRARTQ GMFLGGGSLL GGEQSLPVAM NTISSEAAMF DVEYARWVEE HHRIVCELRA  240
AVQEHLPENE LRLFVDNCLA HYDQVMNLKS LVAKTDVFHL VSGMWKTPAE RCFMWIGGFK  300
PSELIKIILS QIEPLTEQQI LGICGLQQST QEAEEALSQG LEALNQSLSD TITSDSLSYP  360
LNMANYMGQM AVAMNKLSTL EGFVRQADNL RHQTIHRLHQ LLTTRQAARC FLAIAEYFHR  420
LRALSSLWLA RPRVE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269\|PubMed:12777042}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang07g06050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-150	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416967.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	Q52MZ2	0.0	TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBL	A0A0L9U7L8	0.0	A0A0L9U7L8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RXK0	0.0	A0A0S3RXK0_PHAAN; Uncharacterized protein
STRING	XP_007162295.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4731	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.1	1e-166	bZIP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]