PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g05460.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 264aa    MW: 30081.3 Da    PI: 10.041
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g05460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34711622102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+++++++sw+ +g++fvv+++ efa+++Lp++Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ Fkkg++e+l++
  Vang07g05460.1  71 FLLKTYMLVEDPATDNVVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSFVRQLNTYGFRKVATSR---------WEFFNERFKKGEREQLNE 156
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Vang07g05460.1 157 IQRRKA 162
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3564154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3167160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5167160IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3071160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-197194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-19122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
LWSRVGLLLL GLGVLNCPSS LLFLSSLLIF SFSSKPKTYH SFFLDRTTKM KITNNKGLLL  60
EGGRKSTPPP FLLKTYMLVE DPATDNVVSW NVDGTAFVVW QPAEFARDLL PTFFKHSNFS  120
SFVRQLNTYG FRKVATSRWE FFNERFKKGE REQLNEIQRR KAWSNKQQGN GANQVTAHDS  180
DEDQRSSSTS SSCGYSTLVD ENKRLKKENG VLNYELTSMK RKCKELVDLV AKYSSHAQEK  240
EEDERPMLFG VRLELARILG KSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-196616024129Heat shock factor protein 1
5d5v_B1e-196616024129Heat shock factor protein 1
5d5v_D1e-196616024129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g05460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417898.11e-152PREDICTED: heat stress transcription factor B-3
SwissprotO222303e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0L9U7H41e-151A0A0L9U7H4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RXR41e-151A0A0S3RXR4_PHAAN; Uncharacterized protein
STRINGXP_007162180.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.18e-61heat shock transcription factor B3