PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g03600.3 | ||||||||
Common Name | LR48_Vigan06g013700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17377.6 Da PI: 5.1961 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 2 | 50 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Vang07g03600.3 2 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 50 9****998.**********854...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-36 | 1 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 1 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 2 | 59 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.48E-32 | 2 | 60 | No hit | No description |
Pfam | PF00847 | 5.9E-12 | 2 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 2 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 2 | 13 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MYRGVRMRQW GKWVSEIREP KKKSRIWLGT FPTPEMAARA HDVAALTIKG TSAFLNFPEL 60 ASYLPRPPTT SPKDIQAAAA EAAALNCDAQ PQARAQARAQ AQIMPDGDDA FLDLPDLLAD 120 SSQSAGGFGY SASWFVAAPE HLDSAFRLDD PPFPWDSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 2 | 59 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00436 | DAP | Transfer from AT4G16750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g03600.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427070.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9SUK8 | 2e-44 | ERF39_ARATH; Ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A0L9UQ36 | 1e-112 | A0A0L9UQ36_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T5D1 | 1e-112 | A0A0S3T5D1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157270.1 | 4e-83 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-42 | ERF family protein |
Publications ? help Back to Top | |||
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