PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g03310.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 26173.9 Da PI: 7.6664 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H Vang07g03310.2 72 YTCTYCRREFRSAQALGGHMNVH 94 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 69 | 99 | No hit | No description |
SMART | SM00355 | 0.0057 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.1E-7 | 72 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.344 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTQIQKLSQS QHPKKQQPQP NPNITTTTPS SWMWNPSQQL HHQEDDDDSW EVRAFAEDTR 60 NIMGTTWPPR SYTCTYCRRE FRSAQALGGH MNVHRRDRAR LNQPPPSSTA ISSLPTSSPY 120 INIPPQDLVA NAGLCLLYHL PPSPSAPPFS NSPSTNTLSS SPSPSTLLSI SSYPSTNFLM 180 QTSFNFPGAP STGINTATVS SFYSSKVEQS ATSSSFAAGH LEELDLELRL GHKPTQTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 67 | 94 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 67 | 94 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g03310.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427025.1 | 1e-174 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0S3T571 | 1e-173 | A0A0S3T571_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156668.1 | 4e-91 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-35 | C2H2 family protein |