PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g03030.1 | ||||||||
Common Name | LR48_Vigan06g023000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 289aa MW: 32310.4 Da PI: 8.1819 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.5e-19 | 143 | 197 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Vang07g03030.1 143 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 197 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125 | 3.5e-40 | 143 | 232 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Vang07g03030.1 143 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 232 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.653 | 139 | 199 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 141 | 203 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-18 | 141 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 143 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.13E-17 | 143 | 200 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 143 | 197 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 174 | 197 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.2E-10 | 199 | 233 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-24 | 199 | 242 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGFDHDASTS GLHLVLGLSL TATTTPSTKP QDHHHHHHHH FCVVKPSPTK PNSPNEPSLT 60 LGLSGDSCHL AKQVPNNSKV YCEDPLDMSR QTSPHSVVSS FSTGRVVKRE RDLSFEEVEA 120 EAEAEERVSS RVSDEEEDGT NARKKLRLTK EQSALLEESF KQHSTLNPKQ KQALARQLNL 180 RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR RLKKELQELK ALKLAQPLYM 240 PMPAATLTMC PSCERLGGVS DNASNKSPFS MAPKTHFYNP FANPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 199 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g03030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426533.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 3e-93 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0L9UQV6 | 0.0 | A0A0L9UQV6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T5V1 | 0.0 | A0A0S3T5V1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156684.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 7e-77 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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