PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0729s00050.1
Common NameLR48_Vigan118s002100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 407aa    MW: 45934.9 Da    PI: 6.3767
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0729s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3565.8e-109434021374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       lv+ Ll+cAeav  +d+++++ l++r+  lasp+gd++qR+  +f+ +L+ rl++   +++    +   +    +++l a++l+++++P+++f
  Vang0729s00050.1  43 LVHMLLACAEAVGCRDNHQTELLINRIWALASPSGDALQRVSYCFATGLKCRLSK---STFM--DMPLIN---RENKLEAFQLLYQITPYITF 127
                       689****************************************************...3332..333333...5679999************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.r 185
                       ++++aN+aI +a +g++ +Hi+D+++++ lQW +L++a+ sRpegpp++RiTg+ ++e  ++ +l++  + L + A++lg+++ef+++ +  +
  Vang0729s00050.1 128 GFMVANEAIFQASQGKSSIHIVDLGMQHTLQWSSLIRAFVSRPEGPPMVRITGLTDNE--DNSKLQTSMNVLVQEASSLGMHLEFHTISEPaS 218
                       ********************************************************55..9**************************844347 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        + +++e+L++++gE+l Vn++lqlh+ ++es    +   e+L  vk+l P+ ++vveq+++hn++ Fl rfle+l+yysa+fdslea +pr+
  Vang0729s00050.1 219 PSVFTVEKLNLRKGEVLFVNSILQLHKYVKESRGNLK---EILLSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACMPRN 308
                       8889*************************77766666...9**************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s++r+k+Er  +++ei n+va eg er+erhe++e+Wr++l++aGF+ +pl+   ++q++++l+ ++ dgy++ +e+g l+lgWk+rp+++ S
  Vang0729s00050.1 309 SQQRMKIERLHFAEEILNIVAYEGPERIERHERVEQWRRQLGRAGFQVMPLK--CTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMSS 399
                       ***************************************************7..679************************************ PP

              GRAS 372 aWr 374
                       aW+
  Vang0729s00050.1 400 AWQ 402
                       **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.13317384IPR005202Transcription factor GRAS
PfamPF035142.0E-10643402IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
LEMYENLTML EEEVAMSDSF GTLPEFVHCG KEANLGVEQG LELVHMLLAC AEAVGCRDNH  60
QTELLINRIW ALASPSGDAL QRVSYCFATG LKCRLSKSTF MDMPLINREN KLEAFQLLYQ  120
ITPYITFGFM VANEAIFQAS QGKSSIHIVD LGMQHTLQWS SLIRAFVSRP EGPPMVRITG  180
LTDNEDNSKL QTSMNVLVQE ASSLGMHLEF HTISEPASPS VFTVEKLNLR KGEVLFVNSI  240
LQLHKYVKES RGNLKEILLS VKKLGPTAFT VVEQDTNHNG PFFLGRFLES LHYYSAIFDS  300
LEACMPRNSQ QRMKIERLHF AEEILNIVAY EGPERIERHE RVEQWRRQLG RAGFQVMPLK  360
CTSQVRMMLS VYDCDGYTLS SEKGNLLLGW KGRPVIMSSA WQVASV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-633840113377Protein SCARECROW
5b3h_D2e-633840113377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0729s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405660.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0L9T5G10.0A0A0L9T5G1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAG30.0A0A0S3SAG3_PHAAN; Uncharacterized protein
STRINGXP_007133417.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-79RGA-like 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]