PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g25600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25632.2 Da PI: 8.6069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.4e-05 | 97 | 125 | 5 | 38 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKl 38 h ++Er RR+r +++ L ++lP+ +K Vang06g25600.1 97 HMINERMRRQRQRQCCLALHSILPHG-----TKT 125 7899*********************5.....222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-9 | 89 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.896 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-5 | 97 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDSFFPEKLL GEIFWDQPLL PTDQSDVVQN SHIKAEAFPP ATQSAFLQYR DLPRRNNPLN 60 GSNSESMSKR MLAFLRKSSP VERNNVEENE RDRSFRHMIN ERMRRQRQRQ CCLALHSILP 120 HGTKTDNNSV IQTAAKEIVR LKGCREELQR KICEAEGVCV RKKDGGRKIA YLRVADPECG 180 IDSMVERLKW LKEEGVESRR IKSSFSPKEL FAVLEIESGE EV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g25600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412801.1 | 1e-164 | PREDICTED: transcription factor bHLH92 | ||||
TrEMBL | A0A0S3SV84 | 1e-163 | A0A0S3SV84_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145939.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-24 | bHLH family protein |