PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25540.2
Common NameLR48_Vigan02g009800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 126aa    MW: 14491.9 Da    PI: 6.0279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25540.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181868255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrd  +   + +r +lg+f tae+Aa+a+++a+ +++g
  Vang06g25540.2 18 KYRGVRRRP-WGKYAAEIRDSMK---HgQRSWLGTFTTAEDAARAYDRAAYAMRG 68
                    8********.**********444...35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-181878No hitNo description
PfamPF008471.4E-121868IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241878IPR016177DNA-binding domain
SMARTSM003801.8E-351882IPR001471AP2/ERF domain
PROSITE profilePS5103223.1031876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-311878IPR001471AP2/ERF domain
PRINTSPR003672.0E-101930IPR001471AP2/ERF domain
PRINTSPR003672.0E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEEEGSKGKA KDEEEHVKYR GVRRRPWGKY AAEIRDSMKH GQRSWLGTFT TAEDAARAYD  60
RAAYAMRGPF AVLNFPDSVS TSSHGHVERR GRNEDENQVF EFEYFDDKLL EELLGYDEDK  120
SKHGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-341510911114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g25540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-126AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412818.15e-67PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX07e-34ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A0L9TTQ61e-65A0A0L9TTQ6_PHAAN; Uncharacterized protein
STRINGXP_007145842.19e-48(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-33Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]