PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g23360.2 | ||||||||
Common Name | LR48_Vigan02g044500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 146aa MW: 15850 Da PI: 9.5323 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 55.6 | 1.1e-17 | 2 | 34 | 23 | 55 |
G2-like 23 GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Vang06g23360.2 2 GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 34 99******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 2.2E-13 | 1 | 34 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.33E-9 | 1 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-17 | 1 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLAGGSAADS ATDHLFASSP 60 VPPHFLHPAT RPASDHYLPF VPGLQQHRNH HHHQHMAVPA HFGSPRNAHF ELPVLSRMGA 120 SVPGYVEDVE SGGRKVLTLF PAGDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-18 | 1 | 37 | 21 | 57 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g23360.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413418.1 | 1e-102 | PREDICTED: transcription factor PCL1-like | ||||
TrEMBL | A0A0L9TUQ8 | 1e-101 | A0A0L9TUQ8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SU30 | 1e-101 | A0A0S3SU30_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145504.1 | 1e-83 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 3e-41 | G2-like family protein |
Publications ? help Back to Top | |||
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