PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g20670.4
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 404aa    MW: 45340.2 Da    PI: 5.7404
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g20670.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19237271135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vang06g20670.4 237 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 271
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.899231267IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-16231281IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-13233285No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14234269IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.17E-14236285No hitNo description
PfamPF003207.5E-17237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MLFFPEMETI GSVDDLLDFS LDIGEEDDDE DKHRKSCPSL NSKCGNPSLF NSLVPDDPNH  60
SYSLKLEFEP VAWVSELQKV FILWSHIDGD QLLNGPNEPL AHEEKYNSRW GRVYEFVEEE  120
LEWLSNKDAF PSVETFVDLS CIQPDTAKIK KSTPVTSPVL EDSTGSSNSN NSSNSISLLN  180
SCDHLKVPVR ARSKRRSRCR PGIADENSGQ QVWWRQPSNE ISKAEEGMKI SPIGRQCQHC  240
GAEKTPQWRA GPLGPKTLCN ACGVRFKSGR LVPEYRPASS PTFREPCEKG KQFSFGSFGF  300
IVLNNLVSPA KSMRREIREN RMNALERWTN DKEKLMVVVK MDVAIMKDSL GLNLGGANRN  360
YNINLDWIQN FIKSFNLIDS GESINHDNIG GVGKNLVLLV KDL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g20670.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640410.11e-141GATA transcription factor 1
RefseqXP_022640411.11e-141GATA transcription factor 1
RefseqXP_022640412.11e-141GATA transcription factor 1
TrEMBLA0A3Q0F9X61e-140A0A3Q0F9X6_VIGRR; GATA transcription factor 1
STRINGXP_007145298.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-29GATA transcription factor 1