PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g20670.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 398aa    MW: 44575.2 Da    PI: 5.9669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g20670.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19231265135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Vang06g20670.3 231 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 265
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.899225261IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-16225275IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-13227279No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14228263IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.91E-14230279No hitNo description
PfamPF003207.4E-17231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
METIGSVDDL LDFSLDIGEE DDDEDKHRKS CPSLNSKCGN PSLFNSLVPD DPNHSYSLKL  60
EFEPVAWVSE LQKVFILWSH IDGDQLLNGP NEPLAHEEKY NSRWGRVYEF VEEELEWLSN  120
KDAFPSVETF VDLSCIQPDT AKIKKSTPVT SPVLEDSTGS SNSNNSSNSI SLLNSCDHLK  180
VPVRARSKRR SRCRPGIADE NSGQQVWWRQ PSNEISKAEE GMKISPIGRQ CQHCGAEKTP  240
QWRAGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFREP CEKGKQFSFG SFGFIVLNNL  300
VSPAKSMRRE IRENRMNALE RWTNDKEKLM VVVKMDVAIM KDSLGLNLGG ANRNYNINLD  360
WIQNFIKSFN LIDSGESINH DNIGGVGKNL VLLVKDL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g20670.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640410.11e-141GATA transcription factor 1
RefseqXP_022640411.11e-141GATA transcription factor 1
RefseqXP_022640412.11e-141GATA transcription factor 1
TrEMBLA0A3Q0F9X61e-140A0A3Q0F9X6_VIGRR; GATA transcription factor 1
STRINGXP_007145298.11e-124(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-29GATA transcription factor 1