PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g19780.1
Common NameLR48_Vigan02g079800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 457aa    MW: 51208.3 Da    PI: 4.7335
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g19780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.8e-34231142102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F+++kk+ll++
  Vang06g19780.1  23 FLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRSKKHLLKN 108
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r++s
  Vang06g19780.1 109 IQRRRS 114
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.59E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-5319112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.8E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2923112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MNPTDDNSPK PLEVLQMNPV PPFLSKTFDL VDDPTLDPII SWASSGFSFV VWDPLEFARV  60
VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR SKKHLLKNIQ RRRSPQSQQV  120
GSYIGIGSST TEAGRSEVEV EVEIEKLRKE RTILMEEVVD LQQEQRRTAN RAGEVNQRLQ  180
SAEQRQKKMV SFLAKLIQNP AFLARLRQKK EQREIDSPRV VRKFVKQHQH ETGTAEALQE  240
GQIVRYQPDW TNIDMSSESP KLSPVSIEQS PHYLSQGLAG EMSGGAQDLT VQIQNIVTDD  300
LAAVHRITSP QETMIGEGSS EDLLVKGKSV MSPSLELPPD YFTSFPEVLT QEKGFQDFSA  360
LGAEDIIKLE DIWDTGLNLS GVGVGSSCGN ELWGNPMNYE HVPEFGVTSG MSESDMWDIG  420
SGSLGIDKWA GDEPSVGELD GQSGKPKEDR PQNLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-242011226129Heat shock factor protein 1
5d5v_B7e-242011226129Heat shock factor protein 1
5d5v_D7e-242011226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211ARLRQKKEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g19780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511066.10.0heat stress transcription factor A-3
TrEMBLA0A0L9TVM50.0A0A0L9TVM5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3ST160.0A0A0S3ST16_PHAAN; Uncharacterized protein
STRINGXP_007145255.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-103heat shock transcription factor A3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]