PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g16500.1 | ||||||||
Common Name | LR48_Vigan1086s000600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 16069.7 Da PI: 6.5028 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 7 | 29 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Vang06g16500.1 7 YECVFCKRGFTTAQALGGHMNIH 29 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-6 | 5 | 34 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 5 | 33 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MGTGRSYECV FCKRGFTTAQ ALGGHMNIHR KDRANRTKPS TSTKLDDTNT YADLGLYSAS 60 NPSYLSRGTY YSTLPDSEVQ YSEVFCVENQ RDPHLLFGQD WRQKGLTFYT NPLCVHGNKD 120 KIENNTEEDD LDLELRLGHH P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g16500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-129 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411281.1 | 3e-98 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A0L9TIH1 | 7e-97 | A0A0L9TIH1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144929.1 | 1e-75 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 5e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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