PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g16450.1 | ||||||||
Common Name | LR48_Vigan1086s000300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 15694.5 Da PI: 4.6268 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.4 | 9.9e-14 | 1 | 42 | 58 | 99 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 m +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l+++k+ Vang06g16450.1 1 MLTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVEMKA 42 569**********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.947 | 1 | 44 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-11 | 2 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MLTIAYEAQA RIRDPVYGCV SHIFALQQQV ASLQAQLVEM KALLDQNQMV YRNMENHWSE 60 NVGQAFNPFR PTSMNNPISP QSSLDSIDYS SNINDGMSMQ DAQNGDDFSF QACSWKRSHS 120 NDLGELQELA LRIMRKCD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g16450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411278.1 | 1e-100 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 3e-25 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0L9TI26 | 1e-98 | A0A0L9TI26_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SRQ3 | 1e-98 | A0A0S3SRQ3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144925.1 | 2e-85 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 9e-19 | lateral organ boundaries-domain 16 |