PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g13570.1 | ||||||||
Common Name | LR48_Vigan02g132800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 189aa MW: 19977.5 Da PI: 8.2775 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.6 | 5.5e-35 | 41 | 120 | 3 | 82 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 + +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++++a ++++ s+ + Vang06g13570.1 41 VVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVTPSVPS 120 56789**********************************************************99999444222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-30 | 45 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.04 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTSQVVLHNF PHSETKPSTT TTTDSPPTAP SLAITKRSSA VVTRSTKDRH TKVNGRGRRV 60 RMPPLCAARI FQLTRELGHR SDGETIEWLL RHAEPSIIAA TGSGTIPAAP ISSVTPSVPS 120 SESSVSVPVV GGQGMFSVAP PSCRLDLSPP PGLDFAATNG YRHMPFTALL LQPSTGEENQ 180 NDESLGEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g13570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414009.1 | 1e-134 | PREDICTED: transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 4e-42 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A0L9TX63 | 1e-133 | A0A0L9TX63_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SR38 | 1e-133 | A0A0S3SR38_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144360.1 | 8e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 8e-42 | TCP family protein |
Publications ? help Back to Top | |||
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