PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g09640.6

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 475aa MW: 52445.6 Da PI: 5.3077

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g09640.6	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	425.4	4.6e-130	103	460	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv++L++cA+ v+ gdl+ a +l++ ++ l + + ++a yf AL++r+++ ++a+p+s+ e+ ++ ++e++P+lkf Vang06g09640.6 103 LVHTLITCADSVQRGDLAFAGSLIESMQALLAHVNtsCGIGKVAGYFIDALRRRISS---PQSAAFPTSPY------ENEVLYHHYYEACPYLKF 188 689************************944444136899***********9...22333444444......45556788****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gppslR+Tgvg+p+++++++l+e+g rLa++A++++v+f f+ ++a rled Vang06g09640.6 189 AHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLED 283 ***********************************************************************************9888 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++L+v+p+Ea+aVn+++qlhr+l s +d+vL ++sl+Pk+v+vveqea+hn+e Flerf+eal+yys++fdslea e ++ Vang06g09640.6 284 VKPWMLQVSPKEAVAVNSIMQLHRVL------GSGIDTVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEAC---SVEPDK 369 *********************9......556789*****************************************998...357788 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +++l+rei+nvv+ceg +r erhe l+kWrerl++aGF+p++l+++a+kqa++ll ++ +gy vee++g+l+lgW++rpL+++SaW+ Vang06g09640.6 370 GLAEMYLQREICNVVCCEGPARLERHEPLAKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQ 460 889999**********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.8E-23	1	67	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	1.1E-5	1	74	No hit	No description
PROSITE profile	PS50985	63.332	77	440	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-127	103	460	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
LAGLGYKVRS SELCQVAENM ERLENAINTV NSSRDISQVV SDALLYDPSN IGLGSWVDTL 60 LSELDQTVSL PYDLSSDLPD LPTDPNRQLG MVTTVEEDSG IRLVHTLITC ADSVQRGDLA 120 FAGSLIESMQ ALLAHVNTSC GIGKVAGYFI DALRRRISSP QSAAFPTSPY ENEVLYHHYY 180 EACPYLKFAH FTANQAILEA FNGHDCVHVI DFNLMQGLQW PALIQALALR PGGPPSLRLT 240 GVGPPSPDER DTLREIGARL AELAHSVNVR FTFRGVAAWR LEDVKPWMLQ VSPKEAVAVN 300 SIMQLHRVLG SGIDTVLGWI RSLNPKIVTV VEQEANHNGE GFLERFTEAL HYYSTVFDSL 360 EACSVEPDKG LAEMYLQREI CNVVCCEGPA RLERHEPLAK WRERLGRAGF RPLHLGSNAY 420 KQASMLLTLF SAEGYCVEEN QGCLTLGWHS RPLIAASAWQ AAPLREGETV RFQR*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

LAGLGYKVRS SELCQVAENM ERLENAINTV NSSRDISQVV SDALLYDPSN IGLGSWVDTL  60
LSELDQTVSL PYDLSSDLPD LPTDPNRQLG MVTTVEEDSG IRLVHTLITC ADSVQRGDLA  120
FAGSLIESMQ ALLAHVNTSC GIGKVAGYFI DALRRRISSP QSAAFPTSPY ENEVLYHHYY  180
EACPYLKFAH FTANQAILEA FNGHDCVHVI DFNLMQGLQW PALIQALALR PGGPPSLRLT  240
GVGPPSPDER DTLREIGARL AELAHSVNVR FTFRGVAAWR LEDVKPWMLQ VSPKEAVAVN  300
SIMQLHRVLG SGIDTVLGWI RSLNPKIVTV VEQEANHNGE GFLERFTEAL HYYSTVFDSL  360
EACSVEPDKG LAEMYLQREI CNVVCCEGPA RLERHEPLAK WRERLGRAGF RPLHLGSNAY  420
KQASMLLTLF SAEGYCVEEN QGCLTLGWHS RPLIAASAWQ AAPLREGETV RFQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-67	96	459	12	378	Protein SCARECROW
5b3h_A	8e-67	96	459	11	377	Protein SCARECROW
5b3h_D	8e-67	96	459	11	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g09640.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433963.1	0.0	PREDICTED: DELLA protein GAI-like
Swissprot	Q9LQT8	1e-155	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A0S3SPA0	0.0	A0A0S3SPA0_PHAAN; Uncharacterized protein
STRING	XP_007144131.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-156	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]