PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09640.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 448aa    MW: 49492.3 Da    PI: 5.7292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09640.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.7e-130764331374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv++L++cA+ v+ gdl+ a +l++ ++ l +       + ++a yf  AL++r+++     ++a+p+s+       e+   ++ ++e++P+lkf
  Vang06g09640.2  76 LVHTLITCADSVQRGDLAFAGSLIESMQALLAHVNtsCGIGKVAGYFIDALRRRISS---PQSAAFPTSPY------ENEVLYHHYYEACPYLKF 161
                     689**************************944444136899***************9...22333444444......45556788********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gppslR+Tgvg+p+++++++l+e+g rLa++A++++v+f f+ ++a rled
  Vang06g09640.2 162 AHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLED 256
                     ***************************************************************************************9888**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+Ea+aVn+++qlhr+l       s +d+vL  ++sl+Pk+v+vveqea+hn+e Flerf+eal+yys++fdslea      e ++
  Vang06g09640.2 257 VKPWMLQVSPKEAVAVNSIMQLHRVL------GSGIDTVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEAC---SVEPDK 342
                     *************************9......556789*********************************************998...357788 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++l+rei+nvv+ceg +r erhe l+kWrerl++aGF+p++l+++a+kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaW+
  Vang06g09640.2 343 GLAEMYLQREICNVVCCEGPARLERHEPLAKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQ 433
                     889999************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.6E-6278No hitNo description
PfamPF120417.0E-24270IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098563.28850413IPR005202Transcription factor GRAS
PfamPF035141.3E-12776433IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDGQLAGLGY KVRSSELCQV AENMERLENA INTVNSSRDI SQVVSDALLY DPSNIGLGSW  60
VDTLLSELDE DSGIRLVHTL ITCADSVQRG DLAFAGSLIE SMQALLAHVN TSCGIGKVAG  120
YFIDALRRRI SSPQSAAFPT SPYENEVLYH HYYEACPYLK FAHFTANQAI LEAFNGHDCV  180
HVIDFNLMQG LQWPALIQAL ALRPGGPPSL RLTGVGPPSP DERDTLREIG ARLAELAHSV  240
NVRFTFRGVA AWRLEDVKPW MLQVSPKEAV AVNSIMQLHR VLGSGIDTVL GWIRSLNPKI  300
VTVVEQEANH NGEGFLERFT EALHYYSTVF DSLEACSVEP DKGLAEMYLQ REICNVVCCE  360
GPARLERHEP LAKWRERLGR AGFRPLHLGS NAYKQASMLL TLFSAEGYCV EENQGCLTLG  420
WHSRPLIAAS AWQAAPLREG ETVRFQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-678343226378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09640.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433963.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ8S4W71e-148GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0S3SPA00.0A0A0S3SPA0_PHAAN; Uncharacterized protein
STRINGXP_007144131.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-150GRAS family protein