PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09570.1 | ||||||||
Common Name | LR48_Vigan09g108400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 20074.5 Da PI: 5.7152 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.1 | 1.1e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Vang06g09570.1 22 KGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 16 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.133 | 17 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-17 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-18 | 22 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.85E-23 | 23 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.68E-13 | 24 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 73 | 96 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MYWGVMAGNM GWGMIEEQGW RKGPWTAEED RLLIQYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKKGQITP QEESIIQELH ARWGNRVPST SQETQEMVNM CPNTSEQQGY 120 FYSMFNVSDN VSAPESSNEE ILWDGLWNLD DVLCNFNAAS ATSKTSLHNL VTPFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-15 | 22 | 96 | 27 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09570.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-134 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513230.1 | 5e-65 | transcription factor MYB2 | ||||
TrEMBL | A0A0L9VBI7 | 2e-64 | A0A0L9VBI7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SP86 | 2e-64 | A0A0S3SP86_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144143.1 | 2e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 7e-50 | myb domain protein 305 |
Publications ? help Back to Top | |||
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