PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09200.6 | ||||||||
Common Name | LR48_Vigan09g105900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19848.2 Da PI: 9.3761 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 10 | 59 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vang06g09200.6 10 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 59 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.39E-31 | 8 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 9 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 9 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 9 | 67 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-33 | 9 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 10 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKYGGRGKLF KGVRQRHWGK WVAEIRLPRN RTRVWLGTFD TAEDAAIAYD TAAYILRGEY 60 AQLNFPDLKH VIQANSLNGT TAALVEAKLQ AISQGVSSHR KPTDSPAGLS NKHTDENGKL 120 KSTNDKNSTM KEWQFDNTEK SKSIHHDISD VETFQLSRMP SLDMDSIWDE LLVSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 6 | 66 | 2 | 63 | ATERF1 |
3gcc_A | 2e-21 | 6 | 66 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09200.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435506.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 1e-50 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A0L9VBG0 | 1e-127 | A0A0L9VBG0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144182.1 | 1e-116 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-40 | ERF family protein |
Publications ? help Back to Top | |||
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