PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g09200.2 | ||||||||
Common Name | LR48_Vigan09g105900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 41806.7 Da PI: 8.1431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 212 | 261 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vang06g09200.2 212 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 261 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-30 | 210 | 270 | No hit | No description |
SuperFamily | SSF54171 | 4.05E-22 | 211 | 269 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.049 | 211 | 268 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-31 | 211 | 269 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 211 | 274 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 212 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-12 | 212 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 234 | 250 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
METGSKFLDN AMIGVSHSLT ASNHLHVLRS GENSSITSSQ QLLSCSNSTS MKEEAPLATW 60 ISHIPEKFNG PQDIKNVRER NRSNSIFPAS GTKNSSIPLN LLETLPPLTM APCFDEPVAS 120 LASSSAPPNF PNLTLVLQEP SMVYSSSSNM KSGEVMSVTS NPTYQVPHFG QNQHQGCSDA 180 HKTNKNLKSF NENWLSSTRT QPMKYGGRGK LFKGVRQRHW GKWVAEIRLP RNRTRVWLGT 240 FDTAEDAAIA YDTAAYILRG EYAQLNFPDL KHVIQANSLN GTTAALVEAK LQAISQGVSS 300 HRKPTDSPAG LSNKHTDENG KLKSTNDKNS TMKEWQFDNT EKSKSIHHDI SDVETFQLSR 360 MPSLDMDSIW DELLVSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 207 | 268 | 1 | 63 | ATERF1 |
3gcc_A | 5e-21 | 207 | 268 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g09200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435506.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A0L9VBG0 | 0.0 | A0A0L9VBG0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144182.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 5e-48 | ERF family protein |
Publications ? help Back to Top | |||
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