PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g07490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 393aa    MW: 42296.9 Da    PI: 6.6038
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g07490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-17297330134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Vang06g07490.1 297 CMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 330
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.3E-7337385IPR016679Transcription factor, GATA, plant
SMARTSM004012.9E-15291341IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.253291327IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14295354No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14295328IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.11E-13296343No hitNo description
PfamPF003206.7E-15297330IPR000679Zinc finger, GATA-type
PROSITE patternPS003440297322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
LPLLSSFSTF KDCTFFFSFI SNIQTYHFYP SGNFPPAEKM VGPNFMDEID CGSFFDHIDD  60
LLDFPVEEVE GITPTLPAAA AAAAGNCNSL ASIWPAGADS FPGSDSVFSG NSASDLSAEL  120
SVPYEDIVQL EWLSNFVEDS FCGGSLTMKK VEEPSCITKE DSVHNQFHTS SPVSVLESSS  180
SCSGGKTVPP PPRSPEVYIP VPCGRARSKR PRPATFNPRP AMNLISPASS FVGENIQPNV  240
ISPKTSSDSE NFAESQLVAK MPKQVCGEPK KKKKVKVTVP AGGGDSNQNG LQAVRKCMHC  300
EITKTPQWRA GPMGPKTLCN ACGVRFKSGR LYPEYRPAAS PTFCPSLHSN SHKKVLEMRC  360
RGIEKSGFAM NNVAASPELI PNTNSSLSLE YI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212KRPRP
2268274PKKKKKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g07490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411888.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_017411889.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0S3SNY10.0A0A0S3SNY1_PHAAN; GATA transcription factor
STRINGXP_007143712.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-42GATA transcription factor 9