PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g06040.1 | ||||||||
Common Name | LR48_Vigan02g184300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 21141.6 Da PI: 4.6971 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 2 | 36 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++v+ +G g W+ +++ g++R++k+c++rw++yl Vang06g06040.1 2 NYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYL 36 68*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-14 | 1 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.649 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 5.04E-5 | 2 | 36 | No hit | No description |
Pfam | PF00249 | 1.2E-8 | 2 | 36 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.38E-16 | 2 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 3.996 | 37 | 86 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-7 | 40 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNYVQVHGEG KWRELSKRAG LKRCGKSCRL RWLNYLKPDI KRGNISSDEE DLIIRLHKLL 60 GNRCTKVMMP GNDSVNTMNF IATTWDHNPS ASMPQDDEHN HCFTGVLQDF DLGDFLMSYE 120 DDCRFNGYAC VEIPQHIFED QTWRLDDSMV EETWYENWKH DTYFSQEQDM DMDMGFSSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g06040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027936345.1 | 7e-91 | transcription factor MYB8-like | ||||
TrEMBL | A0A4D6N6Y7 | 1e-86 | A0A4D6N6Y7_VIGUN; Myb proto-oncogene protein | ||||
STRING | GLYMA10G35061.1 | 1e-59 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF30879 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 8e-32 | MYB family protein |
Publications ? help Back to Top | |||
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