PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04820.1
Common NameLR48_Vigan02g213800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 313aa    MW: 35081.5 Da    PI: 8.0662
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36241142101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  Vang06g04820.1  24 FLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGQKQLLCE 109
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Vang06g04820.1 110 IQRRK 114
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3813108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5820113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.17E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTPRLEHNSD STSAESQRSL PTPFLTKTYQ LVDDHTIDDV ISWNDSGSSF IVWNTTVFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNECFR RGQKQLLCEI QRRKILSSSP  120
PVGATASVAV PSPLALSAIP TVKPIVSPSN STEEQVISSN SSPSRVPAEL LDENERLRKE  180
NILLMKELEE MRSLCNNILN LMSNYATSKA DGGTDAVKTL GLMPSKRCSG ENAAEKMNPK  240
LFGVAIGTKR AREEGRGAEY DTVLSLHPFH ADVKSEPLDF ERHGENRSTS WLNHCRTANE  300
RECVIDTRRC KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262411329129Heat shock factor protein 1
5d5v_B1e-262411329129Heat shock factor protein 1
5d5v_D1e-262411329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413533.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9SCW46e-83HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0L9TZI50.0A0A0L9TZI5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SMX30.0A0A0S3SMX3_PHAAN; Uncharacterized protein
STRINGXP_007143381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-85heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]