PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g02360.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 662aa MW: 72964.9 Da PI: 5.0199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.7e-09 | 271 | 311 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++L +Av+Y+k Lq Vang06g02360.2 271 RKRRERINERLRILQNLVPNG-----TKVDISTMLDEAVQYVKFLQ 311 9******************97.....8******************9 PP | |||||||
2 | HLH | 32.8 | 1.2e-10 | 585 | 625 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Vang06g02360.2 585 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 625 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.116 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-14 | 263 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-12 | 267 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-11 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.77E-11 | 270 | 315 | No hit | No description |
Pfam | PF00010 | 1.0E-6 | 271 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.402 | 575 | 624 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-14 | 575 | 640 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-13 | 580 | 634 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-12 | 581 | 630 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-8 | 585 | 625 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00406 | 591 | 629 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 662 aa Download sequence Send to blast |
MESSQQISEE WGSLCGLHTT EEADFMAQLF GGTYCSVTEK HYGNTTFGFW PAHESTTVTM 60 KATNSNSYFL PNVTDINLCF SQGSSSSIDS GNSVFSTTSS GPYYCDPATN FDSVSMAFFL 120 GDAQFSPHSF HCYDNSINEN TDEESSLDPV ALADNNLQAK REYEMMVSEY AHEDRSENLE 180 NLTKRLRNSK EVSKTLRNTK LKKNSKSASM NKNEDDRSLN LEGLGCFSQG DSNASLKPNG 240 GALKDPAPPS LLRKSRATKG PATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML 300 DEAVQYVKFL QLQIKLLSSD DMWMYAPIAY NADFMSQLLD NCSLPENLCG NFHLGIPSAT 360 WPGHESTILT VTSINDSPYF PTTADNSNSN YLCFSQGSCS TSDSSNIFRA TSGNKHCLND 420 PVANIGYVSM GFAKFSPYNV QGSDSQQMNE NTDQDLCPEV IADKNSQDHQ ECEVLVSEAA 480 TEDITTNLEK SGKRSRGSMQ VRKSKKNAKS VKKPKSDSIS NSEEGRSPDL QGCCSDDDDS 540 NASQELNGGG SPNLSLEDST SLKLKGKKST ASRGSATDPQ SVYARRRRER INERLKILQN 600 LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYA PIAYNGMNIG LDLNIIPTKQ 660 P* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g02360.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413210.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
Swissprot | Q7XHI9 | 2e-51 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A4D6N8I1 | 0.0 | A0A4D6N8I1_VIGUN; Aprataxin | ||||
STRING | XP_007143115.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 7e-41 | bHLH family protein |