PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02040.1
Common NameLR48_Vigan02g240100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 263aa    MW: 28384.9 Da    PI: 8.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000531471841254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Vang06g02040.1 147 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 184
                     77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.906135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-5146189No hitNo description
Gene3DG3DSA:4.10.280.103.1E-7146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPKDEFELT GTTFSQLLFG DDLDATPALP LPHHHCSYDH HTLSASPLFS FHKPPKMLCF  60
GNHQTQPHIP PTIVTPQKSV ITSSDSSSAS SSNHTNTAFT SLPKSTSLQK KRNGLGQEPV  120
TKVGVGGQRL TKKTKAENPT STGHAKRKEK LGERIAALQQ LVSPFGKTDT ASVLHEAMGY  180
IRFLHDQVQV LCSPYLQSLS SSHHQHQHGD GENNEEEVKK DLRSRGLCLI PVGCTVHVAS  240
SNGADFWSPG AIGNKVSPSG KK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g02040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-173AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413679.10.0PREDICTED: transcription factor bHLH113 isoform X1
TrEMBLA0A0L9U0G50.0A0A0L9U0G5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SM880.0A0A0S3SM88_PHAAN; Uncharacterized protein
STRINGXP_007143069.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.16e-49bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]