PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g00440.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 403aa    MW: 43447.1 Da    PI: 9.3083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g00440.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-052345123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  Vang06g00440.2 23 FICEVCNKGFQREQNLQLHRRGH 45
                    89*******************88 PP
2zf-C2H212.50.0004599121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  Vang06g00440.2  99 WKCDKCSKKYAVQSDWKAHSKTC 121
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-72245No hitNo description
Gene3DG3DSA:3.30.160.604.2E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.8E-52345IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.992345IPR007087Zinc finger, C2H2
SMARTSM003550.00522345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM003551306494IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-587120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-794119No hitNo description
SMARTSM0035515099119IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MATDPDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK  60
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARHPPN LGAAIGTHLF GTTANTIPLN  180
LSQVASHISN IQDPNTQPTE LLRLGGAAAR TSQFDHLLAA QMGASSSNST ASLLKSFGSA  240
SSSSGSKSEQ HRPLVNAANY GGGIFGGNVN EQGNSNLQDL MNSFAVGGNS SIFEGGFEAY  300
DHNSNNNNRE GKVHAMSGSS SIGGSDRLTR DFLGVGQIVR GMSGSGGVAQ REQQQQQHGF  360
NLSSLEADQR NNSNSNNNNN AAPSGQAFGG GGGNFQDLNM LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3595156364Zinc finger protein JACKDAW
5b3h_F2e-3595156364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g00440.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414940.11e-160PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017414941.11e-160PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017414942.11e-160PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A0S3SLJ51e-159A0A0S3SLJ5_PHAAN; Uncharacterized protein
STRINGXP_007142834.11e-155(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-99indeterminate(ID)-domain 5