PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0692s00050.1
Common NameLR48_Vigan10g150900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 339aa    MW: 36730.9 Da    PI: 5.6294
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0692s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18244277134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Vang0692s00050.1 244 CVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 277
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-762332IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-17238288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82238274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-15242275IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15242301No hitNo description
CDDcd002025.59E-15243290No hitNo description
PfamPF003204.7E-16244277IPR000679Zinc finger, GATA-type
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIGNFIDDID CGSFFDHIDD LLEFPAEETS AVTDTTVVTP VAPPPTNFWS TESDSLHATN  60
TVFSGNTVPD LSTELSVPFE DIEQLEWLSN FVEDSFSGGS LTMQQEQPQC TNKEDTTHAQ  120
FQTASPVSVL ESSTFYSGMK AASRNAEIYI PVPCGRARSK RPRPAAFNPY PVMQLISPAS  180
STGENTQPIT TTSKTSSDSE NFAESTIKPP KQASGEHKKK KKIKVTFSGG EDHNAAASQA  240
VRKCVHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF CAAVHSNSHK  300
KVLEMRNKTD PKSGFAADSA SAPELIPNTN SSLSLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0692s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437646.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_017437647.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_017437648.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_017437649.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0L9VL460.0A0A0L9VL46_PHAAN; GATA transcription factor
TrEMBLA0A0S3TA780.0A0A0S3TA78_PHAAN; GATA transcription factor
STRINGXP_007151876.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-46GATA transcription factor 9
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]