PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09970.1
Common NameLR48_Vigan561s000600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 305aa    MW: 33903.6 Da    PI: 7.6459
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.2e-18190224135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Vang05g09970.1 190 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 224
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.769184220IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-17184234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-15185221IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-15186248No hitNo description
CDDcd002022.22E-14189236No hitNo description
PfamPF003201.1E-15190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
LNPPQQPEAM EAQELFQNTF YPQFSSDNVT SSNTNASTTD HFIVEDFFDF SNSDEAPLID  60
ATFDSLPTDH SSTVTNLDTT TNNSNFSATD AHFSVDLSLP KLQLISGAGV QKETASETRD  120
PNPALFNPQV SVRGKARSKR TRGPPCNWSS RLVVLSPNTM SPESSHSYSG KKVAPRRRDV  180
SEGSSEGRKC LHCATDKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTK  240
HSNSHRKVLE LRRQKEMVRV QQQQLLHLQH QQNMMFDVPS NGEDYLIHQQ WAPTSHTSSN  300
LLLD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g09970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409179.10.0PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 12
SwissprotP697817e-66GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0L9TDZ00.0A0A0L9TDZ0_PHAAN; GATA transcription factor
STRINGXP_007137230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]