PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g07900.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 312aa MW: 35725.4 Da PI: 8.6982

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g07900.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.6	1.4e-54	57	184	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL +k+++++++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+l++ Vang05g07900.1 57 LPPGFRFHPTDEELVTCYLLNKISDSNFTG-RAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNS 150 79***********************999.89***********99999************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++el+g+kktLvfykgrap+gek++Wvmheyr+ Vang05g07900.1 151 gTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 184 77888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	49	206	IPR003441	NAC domain
PROSITE profile	PS51005	60.719	57	206	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	58	184	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MHVISVVNEN EKWHVENEGI NGRRKDRDFW KMKEKEAIIK EGKDIEMEGT HAKEETLPPG 60 FRFHPTDEEL VTCYLLNKIS DSNFTGRAIT DVDLNKSEPW ELPGKAKMGE KEWYFFSLRD 120 RKYPTGVRTN RATNTGYWKT TGKDKEILNS GTSELIGMKK TLVFYKGRAP RGEKSNWVMH 180 EYRIHSKSSF RTTRQDEWVV CRVFKKSGGA KKFPSSNHTR AVNPYSLEIG PNIMQPPVMQ 240 LGDPAAHFLY GRNYMNSVEL VLDVNSSMMT TGSLGADVGY GSEMSNNMNS QGNRFMGMDH 300 CMDLDNYWPS Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	56	212	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	56	212	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	56	212	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	56	212	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-57	56	212	19	174	NAC domain-containing protein 19
3swm_B	5e-57	56	212	19	174	NAC domain-containing protein 19
3swm_C	5e-57	56	212	19	174	NAC domain-containing protein 19
3swm_D	5e-57	56	212	19	174	NAC domain-containing protein 19
3swp_A	5e-57	56	212	19	174	NAC domain-containing protein 19
3swp_B	5e-57	56	212	19	174	NAC domain-containing protein 19
3swp_C	5e-57	56	212	19	174	NAC domain-containing protein 19
3swp_D	5e-57	56	212	19	174	NAC domain-containing protein 19
4dul_A	5e-57	56	212	16	171	NAC domain-containing protein 19
4dul_B	5e-57	56	212	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269\|PubMed:10079219, ECO:0000269\|PubMed:10750709, ECO:0000269\|PubMed:11245578, ECO:0000269\|PubMed:12163400, ECO:0000269\|PubMed:12492830, ECO:0000269\|PubMed:12610213, ECO:0000269\|PubMed:12787253, ECO:0000269\|PubMed:14617069, ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15500463, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16798887, ECO:0000269\|PubMed:17122068, ECO:0000269\|PubMed:17287247, ECO:0000269\|PubMed:9212461}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g07900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269\|PubMed:15202996, ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:15723790, ECO:0000269\|PubMed:16854978, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17287247}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-151	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409150.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
Swissprot	Q9FRV4	1e-77	NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A4D6NV24	1e-173	A0A4D6NV24_VIGUN; Uncharacterized protein
STRING	XP_007137154.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-106	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Shinohara N,Ohbayashi I,Sugiyama M Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration. Front Plant Sci, 2014. 5: p. 159 [PMID:24808900] Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development. Front Plant Sci, 2014. 5: p. 165 [PMID:24817871] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Cui X, et al. REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis. Nat. Genet., 2016. 48(6): p. 694-9 [PMID:27111035] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] González-Carranza ZH, et al. HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression. PLoS ONE, 2017. 12(9): p. e0185106 [PMID:28934292]