PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g06050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 391aa    MW: 42918.9 Da    PI: 5.1629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g06050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.36.3e-107233902374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA  v+s+   +a + Larl++ +s++g+p+qR+ +yf eAL++++        ++ +p+++++++s+e + ++k++++++P+ kf+hl
  Vang05g06050.1  23 LKALTECASLVESEPD-QAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWA----EQDKGEPKSAKTTTSEELTLSYKALNDACPYSKFAHL 112
                     689********99655.566789******************************9....3344566777777899********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e ++ +Hi+Df+i qG+QW+aLlqa+a+R++g+p +++i g+ + + g     +l++tg+rL++fA+ l+++fef++ + + ++d
  Vang05g06050.1 113 TANQAILEATEDASNIHILDFGIVQGIQWAALLQAFATRSSGKPnKIKISGIPAIALGasPGPSLSATGNRLSEFAKLLDLNFEFTP-ILTPIHD 206
                     ****************************************77776*********88889899*************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++ ++p+EalaVn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea++++  F++rf  a++y+sa+f+sl+ +l+++s er 
  Vang05g06050.1 207 LDRKSFCIDPDEALAVNFMLQLYNLLDEPPTAVD---TALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLDPNLAADSPERF 298
                     **************************99999888...********************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                      vE  llgr+i  v+     +  e +e  e+Wr+ +e+aGF++v+ls++a++qak ll +++ s  +++ e+   g l+l Wkd pL+++S+Wr
  Vang05g06050.1 299 QVESLLLGRRIDAVIGPGPVR--ESMEDREQWRALMERAGFESVSLSHYAVSQAKILLWNYGySSLFSLLEStpPGFLTLAWKDVPLLTLSSWR 390
                     **************9998887..9**************************************9999**99885467788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.4481367IPR005202Transcription factor GRAS
PfamPF035142.2E-10423390IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKCCDEPVNA GLSSEPESAH PLLKALTECA SLVESEPDQA AESLARLRKS VSQHGNPTQR  60
VGFYFCEALS RKIWAEQDKG EPKSAKTTTS EELTLSYKAL NDACPYSKFA HLTANQAILE  120
ATEDASNIHI LDFGIVQGIQ WAALLQAFAT RSSGKPNKIK ISGIPAIALG ASPGPSLSAT  180
GNRLSEFAKL LDLNFEFTPI LTPIHDLDRK SFCIDPDEAL AVNFMLQLYN LLDEPPTAVD  240
TALRLAKSLN PKIVTLGEYE ASLTRVGFVN RFKTAFRYFS AVFESLDPNL AADSPERFQV  300
ESLLLGRRID AVIGPGPVRE SMEDREQWRA LMERAGFESV SLSHYAVSQA KILLWNYGYS  360
SLFSLLESTP PGFLTLAWKD VPLLTLSSWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-140213903375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g06050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522771.10.0scarecrow-like protein 4 isoform X2
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0S3SED30.0A0A0S3SED3_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VWK40.0A0A1S3VWK4_VIGRR; scarecrow-like protein 4 isoform X2
STRINGXP_007131529.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-177GRAS family protein