PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g05490.1
Common NameLR48_Vigan08g191700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 277aa    MW: 31042.8 Da    PI: 6.0999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g05490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.6e-08756154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    rr+ +  rE+ RRdr+N+ f +L  +l ++     +K++Ka++   +++ +++L
  Vang05g05490.1  7 RRTQKADREKLRRDRLNEQFVTLVNILDPD----RPKNDKATVIDDTIQLLQDL 56
                    79999**********************997....79************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-13574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.195656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-11677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-5761No hitNo description
SMARTSM003532.6E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDCTAARRTQ KADREKLRRD RLNEQFVTLV NILDPDRPKN DKATVIDDTI QLLQDLTSQV  60
SKLKDEYAAL NEESCELARE KNDLREEKAS LKSDIEKLSC QYQQQLRTVS PWTAMDHSVM  120
VVPPSYPYPV PMPIPPSPIA MQPYPFYANQ HSAIIPNPCS TYVPYLVPNT LVEQQSIQHI  180
APPLHPGFQS HMSGKLESRN KCKESMVEKH EDSNDVTADR TSGCSADQDL SSGQIKSSEL  240
SRRQSICTEV SSLGRCLSSR SVQESSSSSV VHEHKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g05490.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432435.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT236e-74BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0L9V7P60.0A0A0L9V7P6_PHAAN; Uncharacterized protein
STRINGXP_007131595.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.17e-71bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]