PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g00890.1

Common Name

LR48_Vigan04g250300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 116aa MW: 12482.8 Da PI: 5.5298

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g00890.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	67.4	4.7e-21	2	43	113	154
DUF702 113 avfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a+frcv+v+svdd+ +e+aYqt+v+igGhvf+GiLydqG+e+ Vang05g00890.1 2 AMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQ 43 99**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01624	2.3E-19	2	41	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF05142	3.1E-17	2	42	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MAMFRCVQVR SVDDAVNEIA YQTSVNIGGH VFSGILYDQG PEQNYNINKG ESSTALVDEH 60 QNNSLGLVKN SSSRDSSGVT IASAGHGDPL FPPPPYPFPL ASFRPGMPYF TYPRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g00890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017420508.1	2e-80	PREDICTED: protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A0L9UHB6	5e-79	A0A0L9UHB6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RA68	1e-79	A0A0S3RA68_PHAAN; Uncharacterized protein
STRING	XP_007135936.1	2e-52	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22692	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-15	SHI-related sequence 5

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]